Genome Sequencing and Assembly of Lepisosteus oculatus (Spotted Gar). - SRA

SRX090799: Genome Sequencing and Assembly of Lepisosteus oculatus (Spotted Gar).
2 ILLUMINA (Illumina HiSeq 2000) runs: 24.3M spots, 5.1G bases, 3Gb downloads

UUID: 5a5934e9-fa12-4ab3-ac30-163c0afb2236

Design: 3kb genomic insert library

Submitted by: Broad Institute (BI)

Study: Lepisosteus oculatus genome sequencing

PRJNA68247 • SRP000282 • All experiments • All runs

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Lepisosteus oculatus (spotted gar) genome sequencing

Sample: unidentified organism

SAMN00009845 • SRS024887 • All experiments • All runs

Organism: unidentified

Library:

Name: Solexa-67799

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_190	AGCAATTC
tagged_222	AGGTGCGA
tagged_393	CCAGTTAG
tagged_960	TTGAGCCT

110 reverse

Experiment attributes: (show all 7 attributes...) (hide...)

gssr_ids: 109818.0, 109819.0, 110812.0, 110813.0

lsids: broadinstitute.org:bsp.prod.sample:22KC9, broadins (show full text...)(hide...)

broadinstitute.org:bsp.prod.sample:22KC9, broadinstitute.org:bsp.prod.sample:22KCA, broadinstitute.org:bsp.prod.sample:23IZB, broadinstitute.org:bsp.prod.sample:23IZC

material_type: DNA:DNA Genomic

project: G14236

root_sample_id: SM-21CI1

sample_ids: SM-22KC9, SM-22KCA, SM-23IZB, SM-23IZC

work_request: 25764

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2011-08-06 05:40:14.0	GAPipeline	RTA1.12.4.1	Sequencer Application 1.4.5

Runs: 2 runs, 24.3M spots, 5.1G bases, 3Gb

Run	# of Spots	# of Bases	Size	Published
SRR329654	11,987,314	2.5G	1.5Gb	2011-08-11
SRR329656	12,310,154	2.6G	1.5Gb	2011-08-11

ID:: 103339

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